pnpm tidy up (#33744)

* Fix tsconfig paths

* Tidy pnpm patches

* Fix pnpm-link.ts for devEngines specification

pnpm-workspace.yaml

@@ -64,19 +64,29 @@ allowBuilds:
     workerd: true
 
 patchedDependencies:
+    # Workaround for missing types export
     "@vector-im/matrix-wysiwyg": patches/@vector-im__matrix-wysiwyg.patch
+    # Workaround for lack of React 19 support
     react-blurhash: patches/react-blurhash.patch
+    # Workaround for https://github.com/nfrasser/linkifyjs/issues/429
     linkify-html: patches/linkify-html.patch
+    # Workaround for typescript incompatibilities in an archived dependency - soon to be deleted
     "@matrix-org/react-sdk-module-api": patches/@matrix-org__react-sdk-module-api.patch
+    # Workaround to access a private API
     "@types/auto-launch": patches/@types__auto-launch.patch
-    "@types/mdx": patches/@types__mdx.patch
+    # Workaround for jest still using commonjs and not being able to use the ESM version of await-lock
     await-lock: patches/await-lock.patch
+    # Workaround for global type mismatches
     jest-fixed-jsdom: patches/jest-fixed-jsdom.patch
+    # Workaround for jsdom being super opinionated and making it hard to tweak global properties
     jsdom: patches/jsdom.patch
-    rollup: patches/rollup.patch
+    # Workaround for missing return types
     postcss-mixins: patches/postcss-mixins.patch
+    # Workaround for some babel rules being false positively flagged
     knip: patches/knip.patch
+    # Workaround for being stuck on an old version of plist due to electron-builder not supporting ESM yet
     plist: patches/plist.patch
+    # Workaround for type fails
     "@dnd-kit/abstract": patches/@dnd-kit__abstract.patch
 
 peerDependencyRules: